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Spatial transcriptomic explorer
Spatial
UMAP
Embryo SVGs
Time point
0h
1h
3h
6h
24h
Gene
Spot transpancy
Controls the transparency of the min and max expression value
Expression cutoff by quantile
Maximum cutoff values for each gene in quantile
Color palette
YlOrRd
Spectral
Color used to show gene expression
Important notes:
1, The app might take a few minutes to load the data.
2, DO NOT use Firefox browser for this app, use Chrome, MS Edge or Safari.
3, Contact Changyu Yi (c.yi@latrobe.edu.au) for issues.
Spatial clusters
Download spatial clusters
Spatial expression
Download gene expression
Time point
0h
1h
3h
6h
24h
Gene
Expression cutoff by quantile
Maximum cutoff values for each gene in quantile
Important notes:
1, The app might take a few minutes to load the data.
2, DO NOT use Firefox browser for this app, use Chrome, MS Edge or Safari.
3, Contact Changyu Yi (c.yi@latrobe.edu.au) for issues.
Download figure
Time point
0h
1h
3h
6h
24h
Gene
Spot transpancy
Controls the transparency of the min and max expression value
Expression cutoff by quantile
Maximum cutoff values for each gene in quantile
Color palette
YlOrRd
Spectral
Color used to show gene expression
Important notes:
1, The app might take a few minutes to load the data.
2, DO NOT use Firefox browser for this app, use Chrome, MS Edge or Safari.
3, Contact Changyu Yi (c.yi@latrobe.edu.au) for issues.
Spatial expression
Download gene expression